Jesús S. Aguilar-Ruiz

LYMPHOMA

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.
Ash A. Alizadeh, Michael B. Eisen, R. Eric Davis, Chi Ma, Izidore S. Lossos, Andreas Rosenwald, Jennifer C. Boldrick, Hajeer Sabet, Truc Tran, Xin Yu, John I. Powell, Liming Yang, Gerald E. Marti, Troy Moore, James Hudson Jr, Lisheng Lu, David B. Lewis, Robert Tibshirani, Gavin Sherlock, Wing C. Chan, Timothy C. Greiner, Dennis D. Weisenburger, James O. Armitage, Roger Warnke, Ronald Levy, Wyndham Wilson, Michael R. Grever, John C. Byrd, David Botstein, Patrick O. Brown & Louis M. Staudt

• NATURE, VOL 403, Nº 3, pp. 503-511, February 2000.

• Web supplement to the article

• Complete database (96 instances x 4026 genes) in ARFF format, with labelled classes (DLBCL + 8 classes) [2Mb]

• Complete database (96 instances x 4026 genes) in ARFF format, with labelled classes (45 instances from DLBCL were labelled with Germinal Centre, GCL, or Activated, ACL. In short, 11 classes) [1Mb]

• Reduced database (45 instances x 4026 genes) in ARFF format, with two labelled classes (Germinal Centre, GCL, and Activated, ACL) [1Mb]

LEUKEMIA

Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring.
T.R. Golub, D. K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J. P. Mesirov, H. Coller, M. L. Loh, J. R. Downing, M. A. Caligiuri, C. D. Bloomfield, E. S. Lander.

• SCIENCE, VOL 286, pp. 531-537, 15 October 1999.

• Web supplement to the article

• Training database (38 instances x 7129 genes) in ARFF format, with labelled classes [1.2Mb]

• Test database (34 instances x 7129 genes) in ARFF format, with labelled classes [1.1Mb]

GLOBAL CANCER MAP

Multiclass cancer diagnosis using tumor gene expression signatures.
S. Ramaswamy, P. Tamayo, R. Rifkin, S. Mukherjee, C.-H. Yeang, M. Angelo, C. Ladd, M. Reich, E. Latulippe, J.P. Mesirov, T. Poggio, W. Gerald, M. Loda, E.S. Lander and T.R. Golub.

• PNAS, VOL 98, nº 26, pp. 15149-15154, December 18, 2001.

• Web supplement to the article

• Training database (144 instances x 16063 genes) in ARFF format, with labelled classes [13.1Mb]

• Test database (46 instances x 16063 genes) in ARFF format, with labelled classes [4.5Mb]

DISCOVERY CHALLENGE ECML 2004

The dataset was prepared by downloading and processing verious information from the SAGEmap website as of December 2002.

• Training database (90 instances x 27679 genes) in ARFF format, with labelled classes [8Mb]

• Information about the Tag identity and about the related gene.

• Information about the biological situations.

EMBRYONAL TUMOURS OF THE CENTRAL NERVOUS SYSTEM

Prediction of Central Nervous System Embryonal Tumour Outcome based on Gene Expression.
Scott L. Pomeroy, Pablo Tamayo, Michelle Gaasenbeek, Lisa M. Sturla, Michael Angelo, Margaret E. McLaughlin, John Y. H. Kim, Liliana C. Goumnerova, Peter M. Black, Ching Lau, Jeffrey C. Allen, David Zagzag, James M. Olson, Tom Curran, Cynthia Wetmore, Jaclyn A. Biegel, Tomaso Poggio, Shayan Mukherjee, Ryan Rifkin, Andrea Califano, Gustavo Stolovitzky, David N. Louis, Jill P. Mesirov, Eric S. Lander & Todd R. Golub

• NATURE, VOL 415, pp. 436-442, 24 January 2002.

• Web supplement to the article

• Dataset A (It will be available soon)

• Dataset B (It will be available soon)

• Dataset C (60 instances x 7129 genes) in ARFF format, with two labelled classes [1.85Mb]

COLON CANCER

Broad patterns of gene expression revealed by clustering of tumor and normal colon tissues probed by oligonucleotide arrays.
U. Alon, N. Barkai, D. A. Notterman, K. Gish, S. Ybarra, D. Mack, and A. J. Levine

• PNAS, VOL 96, Issue 12, pp. 6745-6750, 8 June 1999

• Web supplement to the article

• Dataset (62 instances x 2000 genes) in ARFF format, with labelled classes [1.1Mb]

YEAST

Systematic determination of genetic network architecture.
S. Tavazoie, J.D. Hughes, M.J. Campbell, R.J. Cho, G.M. Church.

• Nature Genetics, 1999 Jul;22(3):281-5.

• Web supplement to the article

• Data also used in Biclustering of Expression Data, by Yizong Cheng and George M. Church (Web suplement)

• Dataset (17 instances x 1884 genes) in ARFF format, no labelled classes [0.3Mb]

STATE FAILURE

Advanced Data- and Knowledge-Driven Methods for State Failure Risk Assessment
State Failure Task Force-III

• Dataset (ARFF) [2.5Mb]

• Dataset (Excel) [10.4Mb]

• Data Dictionary - Model Variables