Publications

@article{Saz-Navarro2024,

title = {CyEnGNet—App: A new Cytoscape app for the reconstruction of large co-expression networks using an ensemble approach},

author = {Dulcenombre M. Saz-Navarro and A. Lopez-Fernandez and F. Gómez-Vela and D. Rodríguez-Baena},

url = {https://www.sciencedirect.com/science/article/pii/S2352711024000050},

doi = {10.1016/j.softx.2024.101634},

issn = {2352-7110},

year  = {2024},

date = {2024-01-18},

urldate = {2024-01-18},

journal = {SoftwareX},

volume = {25},

pages = {101634},

abstract = {The construction of gene co-expression networks is an essential tool in Bioinformatics for discovering useful biological knowledge. There are a multitude of methodologies related to the construction of this type of network, and one of them is EnGNet, which carries out a joint and greedy approach to the reconstruction of large gene coexpression networks. This work introduces CyEnGNet-App, a Cytoscape application designed to integrate and leverage the EnGNet algorithm. The application allows dynamic interaction and visualisation of gene networks and integration with other Cytoscape applications. CyEnGNet-App is a valuable addition to the field of Bioinformatics, improving the reconstruction of genetic networks and providing a more accessible and efficient user experience in Cytoscape.},

keywords = {Bioinformatics, Cytoscape, Gene networks, Network analysis, Visualisation},

pubstate = {published},

tppubtype = {article}

}